References¶
MetaPanG¶
TBA.
PanGBank¶
MetaPanG profiles against pangenomes distributed by PanGBank. Analyses that use
the PanGBank database should cite:
Mainguy J, Lemane T, Bazin A, Arnoux J, Gautreau G, Medigue C, Calteau A, Vallenet D. PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN. bioRxiv, 2026. doi:10.64898/2026.08.05.742796.
Website: https://pangbank.genoscope.cns.fr
External tools¶
MetaPanG relies on several external bioinformatics tools, listed here for
reference.
sourmash¶
Website: https://sourmash.readthedocs.io
Reference: Irber L, et al. sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. Journal of Open Source Software, 2024, 9(98):6830. doi:10.21105/joss.06830.
MetaGraph¶
Website: https://metagraph.ethz.ch
Reference: Karasikov M, Mustafa H, Danciu D, Kulkov O, Zimmermann M, Barber C, Ratsch G, Kahles A. Efficient and accurate search in petabase-scale sequence repositories. Nature, 2025, 647(8091):1036-1044. doi:10.1038/s41586-025-09603-w.
PPanGGOLiN¶
Reference: Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, et al. PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph. PLoS Computational Biology, 2020, 16(3):e1007732. doi:10.1371/journal.pcbi.1007732.
graph-tool¶
Website: https://graph-tool.skewed.de
Reference: Peixoto TP. The graph-tool python library. figshare, 2014. doi:10.6084/m9.figshare.1164194.